FreshBooks Bank Transactions Missing or Duplicated

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Workaround available Web Updated November 13, 2026Based on 2 user reportsHow we research

Quick answer

Missing or duplicate imports are fixed by comparing the General Ledger Report to your bank statement, deleting duplicates, and adding old transactions by CSV (bank imports only go back 90 days).

Most likely fix: Find duplicates

How to fix it

Try these in order — the most common fix is first.

  1. 1. Find duplicates

    1. Run the General Ledger Report for Petty Cash
    2. Compare it to the bank statement
    3. Delete the duplicate transaction in FreshBooks
    Did this fix it?
  2. 2. Find missing transactions

    1. Reconcile all transactions in the connected accounts first
    2. Check the opening balance is the real opening balance
    3. Compare month-end balances using the Balance Sheet or Trial Balance
    4. Use the General Ledger Report month by month to locate the gap
    5. Add, edit or undelete via the self-serve option in Bank Reconciliation
    Did this fix it?
  3. 3. Transactions older than 90 days

    1. Add them manually or import a CSV of the bank feed
    2. Then reset the account's opening balance to the earliest transaction date you reconcile
    Did this fix it?

Symptoms

Transactions don't import, appear twice, or Bank Reconciliation won't balance and a Petty Cash balance is left over.

Why it happens

  • Bank Connections only import the last 90 days
  • Reconnecting or disconnecting a bank can import duplicates
  • Wrong opening balance (end-of-day instead of opening balance)
  • Several feeds for the same account

This guide also covers

  • freshbooks duplicate transactions
  • freshbooks bank reconciliation not balancing
  • freshbooks missing bank transactions
  • freshbooks petty cash balance

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